Episode 38: Seqera Pipelines & Seqera Containers

Evan Floden (CEO and co-founder of Seqera) joins Phil Ewels (Product Manager for OSS at Seqera) to talk about two of the big announcements at the recent Nextflow Summit Boston 2024 - Seqera Pipelines and Seqera Containers. We dive into what these two new community offerings are, why we built them and how they work. Links:

• https://seqera.io/pipelines/
• https://seqera.io/containers/
• Announcement blog post
• Nextflow Summit Boston 2024 agenda
• Summit YouTube playlist
• Nextflow 24.04 blog post

Timeline:

00:00 - Introduction

00:37 - Nextflow Summit Boston 2024

01:14 - Summit talks available online

01:57 - Summit announcements

04:32 - Seqera Pipelines - motivations

05:59 - Seqera Pipelines - first look

06:48 - Testing requirements for community pipelines

10:05 - How we tested pipelines

11:53 - SRA-Explorer tangent

12:34 - Seqera Pipelines - live demo

16:14 - Getting Nextflow launch commands

19:12 - Seqera Containers - intro

24:03 - Seqera Containers - live demo

27:13 - Containers - ARM cpu arch builds

28:33 - Singularity containers

29:09 - Wave CLI

31:19 - Nextflow with Seqera Containers

33:22 - Seqera Containers - future usage

35:09 - Where to read more

36:53 - Thank you to the community